{"id":46509,"date":"2023-10-04T12:41:02","date_gmt":"2023-11-06T20:04:00","guid":{"rendered":"https:\/\/www.silicloud.com\/zh\/blog\/46509-2\/"},"modified":"2024-05-04T02:49:46","modified_gmt":"2024-05-03T18:49:46","slug":"46509-2","status":"publish","type":"post","link":"https:\/\/www.silicloud.com\/zh\/blog\/46509-2\/","title":{"rendered":""},"content":{"rendered":"<p>\u524d\u56de\uff08\u65b0\u3057\u3044PC\u304c\u6765\u305f\u306e\u3067\u30d0\u30a4\u30aa\u30a4\u30f3\u30d5\u30a9\u7528\u306b\u74b0\u5883\u306e\u30bb\u30c3\u30c8\u30a2\u30c3\u30d7\uff09\u306b\u5f15\u304d\u7d9a\u304d\u3001PC\u306e\u30bb\u30c3\u30c8\u30a2\u30c3\u30d7\u3002<\/p>\n<p>\u4eca\u56de\u306fR\u3092\u5165\u308c\u3066\u3001Jupyter\u3067\u52d5\u304b\u3059\u3002<br \/>\n\u3064\u3044\u3067\u306bRstudio\u3082\u3044\u308c\u308b\u3002<\/p>\n<ul class=\"post-ul\">\n<li style=\"list-style-type: none;\">\n<ul class=\"post-ul\">R\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb<\/ul>\n<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<ul class=\"post-ul\">\n<li style=\"list-style-type: none;\">\n<ul class=\"post-ul\">Jupyter\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb<\/ul>\n<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<ul class=\"post-ul\">Rstudio\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb<\/ul>\n<h1>R\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb<\/h1>\n<p>R\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\u306f\u4ee5\u4e0b\u306e\u30b5\u30a4\u30c8\u306a\u3069\u3092\u53c2\u8003\u3002<br \/>\nUbuntu Packages For R &#8211; Brief Instructions<br \/>\nHEROIC 2021<\/p>\n<pre class=\"post-pre\"><code><span class=\"gp\">#<\/span>\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\u6642\u306b\u5fc5\u8981\u306a\u30d1\u30c3\u30b1\u30fc\u30b8\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\r\n<span class=\"go\">apt install --no-install-recommends software-properties-common dirmngr\r\n<\/span><span class=\"gp\">#<\/span>pubkey\u3092\u53d6\u5f97\u3059\u308b\u3002\r\n<span class=\"go\">wget -qO- https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu\/marutter_pubkey.asc | sudo tee -a \/etc\/apt\/trusted.gpg.d\/cran_ubuntu_key.asc\r\n<\/span><span class=\"gp\">#<\/span>\u6700\u65b0\u306e\u30d0\u30fc\u30b8\u30e7\u30f3\u3092\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\u3059\u308b\u305f\u3081\u306brepository\u3092\u8ffd\u52a0\r\n<span class=\"gp\">sudo add-apt-repository \"deb https:\/\/cloud.r-project.org\/bin\/linux\/ubuntu $<\/span><span class=\"o\">(<\/span>lsb_release <span class=\"nt\">-cs<\/span><span class=\"o\">)<\/span><span class=\"nt\">-cran40<\/span>\/<span class=\"s2\">\"\r\n<\/span><span class=\"gp\">#<\/span><span class=\"s2\">R\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\r\n<\/span><span class=\"go\">sudo apt install r-base\r\n\r\n<\/span><span class=\"gp\">#<\/span>R\u306e\u8d77\u52d5\r\n<span class=\"go\">sudo R\r\n<\/span><\/code><\/pre>\n<pre class=\"post-pre\"><code><span class=\"n\">R<\/span> <span class=\"n\">version<\/span> <span class=\"m\">4.1.2<\/span> <span class=\"p\">(<\/span><span class=\"m\">2021-11-01<\/span><span class=\"p\">)<\/span> <span class=\"o\">--<\/span> <span class=\"s2\">\"Bird Hippie\"<\/span>\r\n<span class=\"n\">...<\/span>\r\n<\/code><\/pre>\n<p>\u3068\u8868\u793a\u3055\u308c\u308b\u306e\u3067\u3001\u30d0\u30fc\u30b8\u30e7\u30f3\u3092\u78ba\u8a8d\u3059\u308b\u3002<br \/>\n\u30d0\u30fc\u30b8\u30e7\u30f3\u304c\u53e4\u3044\u3068Seurat\u306a\u3069\u304c\u4f7f\u3048\u306a\u304f\u3066\u56f0\u308b\u3002<\/p>\n<pre class=\"post-pre\"><code><span class=\"c1\">#\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\u306e\u78ba\u8a8d\u3064\u3044\u3067\u306b\u5fc5\u8981\u306a\u30d1\u30c3\u30b1\u30fc\u30b8\u3092\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb\u3002<\/span>\r\n<span class=\"n\">install.packages<\/span><span class=\"p\">(<\/span><span class=\"nf\">c<\/span><span class=\"p\">(<\/span><span class=\"s1\">'tidyverse'<\/span><span class=\"p\">,<\/span><span class=\"s1\">'Matrix'<\/span><span class=\"p\">,<\/span><span class=\"s1\">'BiocManager'<\/span><span class=\"p\">,<\/span><span class=\"s1\">'Seurat'<\/span><span class=\"p\">)<\/span>\r\n<\/code><\/pre>\n<h1>Jupyter\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb<\/h1>\n<p>\u6b21\u306b\u3001Jupyter\u3067R\u3092\u52d5\u304b\u3059\u3002<br \/>\n\u4ee5\u4e0b\u3092\u53c2\u8003\u3002<br \/>\nHow To Set Up a JupyterLab Environment on Ubuntu 18.04<\/p>\n<pre class=\"post-pre\"><code><span class=\"go\">sudo apt install python3-pip\r\nsudo pip3 install jupyterlab\r\njupyter lab\r\n<\/span><\/code><\/pre>\n<p>\u6b21\u306bR\u3092\u52d5\u304b\u305b\u308b\u3088\u3046\u306b\u3059\u308b\u3002<\/p>\n<pre class=\"post-pre\"><code><span class=\"n\">install.packages<\/span><span class=\"p\">(<\/span><span class=\"s1\">'IRkernel'<\/span><span class=\"p\">)<\/span>\r\n<span class=\"n\">IRkernel<\/span><span class=\"o\">::<\/span><span class=\"n\">installspec<\/span><span class=\"p\">(<\/span><span class=\"n\">user<\/span><span class=\"o\">=<\/span><span class=\"kc\">FALSE<\/span><span class=\"p\">)<\/span>\r\n<\/code><\/pre>\n<p>jupyter\u3092\u8d77\u52d5\u3057\u3066\u3001R\u304c\u52d5\u304f\u3053\u3068\u3092\u78ba\u8a8d\uff01<\/p>\n<h1>Rstudio\u306e\u30a4\u30f3\u30b9\u30c8\u30fc\u30eb<\/h1>\n<p>Rstudio\u3082\u5165\u308c\u3066\u304a\u304f\u3002<\/p>\n<pre class=\"post-pre\"><code><span class=\"go\">sudo wget https:\/\/download1.rstudio.org\/desktop\/bionic\/amd64\/rstudio-2022.02.0-443-amd64.deb\r\nsudo apt install .\/rstudio-2022.02.0-443-amd64.deb\r\n<\/span><\/code><\/pre>\n<p>Ubuntu\u306e\u30a2\u30d7\u30ea\u30b1\u30fc\u30b7\u30e7\u30f3\u5185\u306bRstudio\u304c\u3067\u304d\u3066\u3044\u308b\u306f\u305a\u306a\u306e\u3067\u3001\u8d77\u52d5\u3057\u3066\u307f\u308b\u3002<\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u524d\u56de\uff08\u65b0\u3057\u3044PC\u304c\u6765\u305f\u306e\u3067\u30d0\u30a4\u30aa\u30a4\u30f3\u30d5\u30a9\u7528\u306b\u74b0\u5883\u306e\u30bb\u30c3\u30c8\u30a2\u30c3\u30d7\uff09\u306b\u5f15\u304d\u7d9a\u304d\u3001PC\u306e\u30bb\u30c3\u30c8\u30a2\u30c3\u30d7\u3002 \u4eca\u56de\u306fR\u3092\u5165 [&hellip;]<\/p>\n","protected":false},"author":12,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[],"class_list":["post-46509","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"yoast_head":"<!-- This site is optimized with the 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